Medical Policy
Policy Num: 11.003.004
Policy Name: Somatic Biomarker Testing (Including Liquid Biopsy) for Targeted Treatment in Metastatic Colorectal Cancer (KRAS, NRAS, BRAF, and HER2)
Policy ID: [11.003.004] [Ac / B / M+ / P+] [2.04.53]
Last Review: August 23, 2024
Next Review: August 20, 2025
Related Policies:
11.003.028 - Genetic Testing for Lynch Syndrome and Other Inherited Colon Cancer Syndromes
11.003.026 - Comprehensive Genomic Profiling for Selecting Targeted Cancer Therapies
11.003.089 - Circulating Tumor DNA and Circulating Tumor Cells for Cancer Management (Liquid Biopsy)
11.003.015 - Gene Expression Profile Testing and Circulating Tumor DNA Testing for Predicting Recurrence in Colon Cancer
05.001.034 - Tropomyosin Receptor Kinase Inhibitors for Locally Advanced or Metastatic Solid Tumors Harboring an NTRK Gene Fusion
Reference No. | Populations | Interventions | Comparators | Outcomes |
1 | Individuals:
| Interventions of interest are:
| Comparators of interest are:
| Relevant outcomes include:
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2 | Individuals:
| Interventions of interest are:
| Comparators of interest are:
| Relevant outcomes include:
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The epidermal growth factor receptor (EGFR) is overexpressed in colorectal cancer (CRC). EGFR-targeted therapy combined with monoclonal antibodies cetuximab and panitumumab has shown a clear survival benefit in patients with metastatic CRC. However, this benefit depends on a lack of variants in certain genes in the signaling pathway downstream from the EGFR. It has been hypothesized that knowledge of tumor cell KRAS, NRAS, BRAF variant status might be used to predict nonresponse to anti-EGFR monoclonal antibody therapy. NTRK gene fusions, which are rare kinase fusion events, are a potential therapeutic target for CRC patients who may benefit from tropomysosin receptor kinase (TRK) inhibitor therapy. More recently, human epidermal growth factor receptor 2 (HER2) testing to select patients for targeted therapy has been proposed. Typically, the evaluation of biomarker status requires tissue biopsy. Circulating tumor DNA or circulating tumor cell testing (also known as a liquid biopsy) is proposed as a non-invasive alternative.
For individuals with metastatic CRC who receive KRAS, NRAS, BRAF, NTRK,or HER2 testing to guide treatment, the evidence includes FDA-approved therapeutics with National Comprehensive Cancer Network (NCCN) recommendations of 2A or higher and was not extensively evaluated. The evidence includes the pivotal studies leading to the FDA and National Comprehensive Cancer Network (NCCN) recommendations.
For individuals with metastatic CRC who receive circulating tumor DNA or circulating tumor cell testing (liquid biopsy) to guide treatment, the evidence includes observational studies. Relevant outcomes are OS, disease-specific survival, test validity, morbid events, and medication use. Given the breadth of methodologies available to assess circulating tumor DNA and circulating tumor cells, the clinical validity of each commercially available test must be established independently. The clinical validity of the OncoBEAM™ RAS CRC Assay has been studied in multiple observational studies. When compared to tissue biopsy, sensitivity ranged from 70% (51% to 84%) to 96% (95% CI, 87% to 100%) and specificity ranged from 83% (95% CI, 71% to 92%) to 94% (82% to 98%). FoundationOne® Liquid has been compared to tissue biopsy with the FoundationACT™ assay in 1 observational study; positive percent agreement was 80% overall and 90% when tissue and liquid biopsy were collected less than 270 days apart. Clinical validity studies were limited by unclear reporting of blinding, use of convenience rather than consecutive samples, and variation in the timing of sample collection. There are no published studies reporting clinical outcomes or clinical utility. The evidence is insufficient to determine that the technology results in an improvement in the net health outcome.
Not applicable.
The objective of this review is to summarize the evidence and guidelines on using biomarker testing to select treatment with U.S. Food and Drug Administration (FDA)-approved targeted therapy for individuals with metastatic colorectal cancer (CRC).
KRAS, NRAS, BRAF, NTRK, or HER2 testing of tumor tissue may be considered medically necessary for individuals with metastatic colorectal cancer to select individuals for treatment with U.S. Food and Drug Administration (FDA)-approved therapies.
All other uses of KRAS, NRAS, BRAF, NTRK, or HER2 testing of tumor tissue to guide colorectal cancer targeted therapy are considered investigational.
Circulating tumor DNA testing (liquid biopsy) to guide treatment in individuals with metastatic colorectal cancer is considered investigational. (see Policy Guidelines)
The National Comprehensive Cancer Network (NCCN) colon cancer guidelines v. 3.202 4 and rectal cancer guidelines v. 3.202 4 do not recommend testing for specific genes over a next generation sequencing panel. The guidelines additionally state that testing may be performed using either tissue or blood-based biopsy, with testing on tissue being preferred.
For expanded panel testing, see evidence review 2.04.115.
Testing for other variants may become available between policy updates.
Testing for individual genes (not gene panels) associated with U.S. Food and Drug Administration (FDA)-approved therapeutics for therapies with NCCN) recommendations of 2A or higher are not subject to extensive evidence review. Note that while the FDA approval of companion diagnostic tests for genes might include tests that are conducted as panels, the FDA approval is for specific genes (such as driver mutations) and not for all of the genes on the test panel.
For somatic biomarker testing related to use of immune checkpoint inhibitor therapy (BRAF, microsatellite instability/mismatch repair [MSI/MMR], PD-L1, tumor mutational burden [TMB]), see evidence review 2.04.157.
Note that TMB is often included in panel tests, and might not have separate coding; Plans with coverage for panels might consider local decision for TMB.
FDA approves tests in between policy review cycles. As such, newly approved tests might need to be considered per local Plan discretion. For guidance on testing criteria between policy updates, refer to the FDA's List of Cleared or Approved Companion Diagnostic Devices (In Vitro and Imaging Tools) (https://www.fda.gov/medical-devices/in-vitro-diagnostics/list-cleared-or-approved-companion-diagnostic-devices-in-vitro-and-imaging-tools) for an updated list of FDA-approved tumor markers and consult the most current version of NCCN management algorithms.
Note: Extensive evidence review is not included for somatic tests of individual genes (not gene panels) associated with FDA -approved therapies with National Comprehensive Cancer Network (NCCN recommendations of 2A or higher. The pivotal evidence is included in Table 2 for informational purposes. Additionally, no evidence review is provided for somatic tests of individual genes that do not have associated FDA-approved therapies regardless of NCCN recommendations, as these off-label therapies are deemed investigational per the Blue Cross and Blue Shield Association Medical Policy Program Policies and Procedures.
Please see the Codes table for details.
Some Plans may have contract or benefit exclusions for genetic testing.
Benefits are determined by the group contract, member benefit booklet, and/or individual subscriber certificate in effect at the time services were rendered. Benefit products or negotiated coverages may have all or some of the services discussed in this medical policy excluded from their coverage.
Cetuximab (Erbitux®; ImClone Systems) and panitumumab (Vectibix®; Amgen) are monoclonal antibodies that bind to the epidermal growth factor receptor (EGFR), preventing intrinsic ligand binding and activation of downstream signaling pathways vital for cancer cell proliferation, invasion, metastasis, and stimulation of neovascularization. The RAS-RAF-MAP kinase pathway is activated in the EGFR cascade. The RAS proteins are G proteins that cycle between active (RAS guanosine triphosphate) and inactive (RAS guanosine diphosphate) forms in response to stimulation from a cell surface receptor, such as EGFR, and they act as a binary switch between the cell surface EGFR and downstream signaling pathways. The KRAS gene can harbor oncogenic variants that result in a constitutively activated protein, independent of EGFR ligand binding, rendering antibodies to the upstream EGFR ineffective. Approximately 40% of colorectal cancers (CRCs) have KRAS variants in codons 12 and 13 in exon 2. Another proto-oncogene that acts downstream from KRAS-NRAS harbors oncogenic variants in codons 12, 13, or 61 that result in constitutive activation of the EGFR-mediated pathway. These variants are less common compared with KRAS, detected in 2% to 7% of CRC specimens. It is unclear whether NRAS variants predict poor response due to anti-EGFR monoclonal antibody therapy or are prognostic of poor CRC outcomes in general. A third proto-oncogene, BRAF, encodes a protein kinase and is involved in intracellular signaling and cell growth; BRAF is also a principal downstream effector of KRAS. BRAF variants occur in fewer than 10% to 15% of CRCs and appear to be a marker of poor prognosis. KRAS and BRAF variants are considered to be mutually exclusive.
Cetuximab and panitumumab have marketing approval from the U.S. Food and Drug Administration (FDA) for the treatment of metastatic CRC in the refractory disease setting. The FDA approval for panitumumab indicates that panitumumab is not indicated for the treatment of patients with KRAS or NRAS variant-positive disease in combination with oxaliplatin-based chemotherapy.1,
A large body of literature has shown that metastatic CRC tumors with a variant in exon 2 (codon 12 or 13) of the KRAS gene do not respond to cetuximab or panitumumab therapy. More recent evidence has shown that variants in KRAS outside exon 2 (ie, in exons 3 [codons 59 and 61] and exon 4 [codons 117 and 146]) and variants in NRAS exon 2 (codons 12 and 13), exon 3 (codons 59 and 61), and exon 4 (codons 117 and 146) also predict a lack of response to these monoclonal antibodies. Variant testing of these exons outside the KRAS exon 2 is referred to as extended RAS testing.
Human epidermal growth factor receptor 2 (HER2) is a member of the HER (EGFR) family of tyrosine kinase receptors and has no specific ligand. When activated, it forms dimers with other EGFR family members. Amplification of HER2 is detected in approximately 3% of patients with CRC, with higher prevalence in RAS/BRAF-wild type tumors (5% to 14%). In addition to its role as a predictive marker for HER2-targeted therapy, HER2 amplification/overexpression is being investigated as a predictor of resistance to EGFR-targeting monoclonal antibodies.
The presence of NTRK gene fusion can be detected by multiple methods including next-generation sequencing, reverse transcription-polymerase chain reaction, fluorescence in situ hybridization and immunohistochemistry.2, Next-generation sequencing provides the most comprehensive view of a large number of genes and may identify NTRK gene fusions as well as other actionable alterations, with minimal tissue needed. The fluorescence in situ hybridization using break-apart probes can detect gene rearrangements in DNA that may generate a fusion transcript. The immunohistochemistry techniques have generally been used in the research setting. Reverse transcription-polymerase chain reaction is designed to identify only known translocation partners and breakpoints and cannot identify novel breakpoints or novel fusion partners.
Normal and tumor cells release small fragments of DNA into the blood, which is referred to as cell-free DNA. Cell-free DNA from nonmalignant cells is released by apoptosis. Most cell-free tumor DNA is derived from apoptotic and/or necrotic tumor cells, either from the primary tumor, metastases, or circulating tumor cells. Unlike apoptosis, necrosis is considered a pathologic process and generates larger DNA fragments due to incomplete and random digestion of genomic DNA. The length or integrity of the circulating DNA can potentially distinguish between apoptotic and necrotic origin. Circulating tumor DNA can be used for genomic characterization of the tumor.
Typically, the evaluation of RAS mutation status requires tissue biopsy. Circulating tumor DNA (ctDNA) testing is proposed as a non-invasive alternative.
Detection of ctDNA is challenging because ctDNA is diluted by nonmalignant circulating DNA and usually represents a small fraction (<1%) of total ctDNA. Therefore, more sensitive methods than the standard sequencing approaches (eg, Sanger sequencing) are needed.
Highly sensitive and specific methods have been developed to detect ctDNA, for both single nucleotide variants (eg, BEAMing [which combines emulsion polymerase chain reaction with magnetic beads and flow cytometry] and digital polymerase chain reaction) and copy-number variants. Digital genomic technologies allow for enumeration of rare variants in complex mixtures of DNA.
Approaches to detecting ctDNA can be considered targeted, which includes the analysis of known genetic mutations from the primary tumor in a small set of frequently occurring driver mutations, or untargeted without knowledge of specific variants present in the primary tumor, which includes array comparative genomic hybridization, next-generation sequencing, and whole exome and genome sequencing. Targeted testing may impact therapy selection.
Circulating tumor cell assays usually start with an enrichment step that increases the concentration of circulating tumor cells, either by biologic properties (expression of protein markers) or physical properties (size, density, electric charge). Circulating tumor cells can then be detected using immunologic, molecular, or functional assays.
A number of liquid biopsy tests related to targeted treatment of metastatic CRC have been developed (Table 1).
Manufacturer | Test | Type of Liquid Biopsy |
---|---|---|
Foundation Medicine | FoundationOne Liquid (Previously FoundationAct) | ctDNA |
Guardant Health | Guardant360® | ctDNA |
IV Diagnostics | Velox™ | CTC |
Personal Genome Diagnostics | PlasmaSELECT™ | ctDNA |
Sysmex Inostics | OncoBEAM | ctDNA |
Circulogene | Theranostics | ctDNA |
CTC: circulating tumor cell; ctDNA: circulating tumor DNA.
Regulatory Status
Table 2 summarizes the targeted treatments approved by the FDA for patients with CRC, along with the approved companion diagnostic tests. The information in Table 2 was current as of May 24, 2024; FDA maintains a list of cleared or approved companion diagnostic devices that is updated regularly.3,
In June 2022, FDA granted accelerated approval to to dabrafenib (Tafinlar®, Novartis) in combination with trametinib (Mekinist®, Novartis) for the treatment of adult and pediatric patients 6 years of age and older with unresectable or metastatic solid tumors with BRAF V600E mutations who have progressed following prior treatment and have no satisfactory alternative treatment options. However, dabrafenib in combination with trametinib is not indicated for patients with CRC because of known intrinsic resistance to BRAFinhibition.4, Therefore, BRAF V600E variant testing to select individuals for treatment with dabrafenib in combination with trametinib is not included in this evidence review and is not listed in Table 2.
Treatment | Indications in Metastatic Colorectal Cancer | Companion Diagnostics | Pivotal Study | NCCN Recommendation Level/Guideline |
Cetuximab (Erbitux) | KRAS wild-type, EGFR-expressing, metastatic colorectal cancer as determined by an FDA-approved test
| cobas KRAS Mutation Test Dako EGFR pharmDx Kit FoundationOne CDx therascreen KRAS RGQ PCR Kit ONCO/Reveal Dx Lung & Colon Cancer Assay xT CDx | 5, 6, | 2A or higher/Metastatic Colorectal Cancer (v. 3.2024) 7, |
Braftovi (Encorafenib) | Treatment of adult patients with metastatic colorectal cancer with a BRAFV600E mutation
| FoundationOne Liquid CDx therascreen BRAF V600E RGQ PCR Kit | 8, | 2A or higher/Metastatic Colorectal Cancer (v. 3.2024) 7, |
Panitumumab (Vectibix) | Treatment of wild-type RAS (defined as wild-type in both KRAS and NRAS as determined by an FDA-approved test for this use) metastatic CRC:
| cobas KRAS Mutation Test CRCDx RAS Mutation Detection Assay Kit Dako EGFR pharmDx Kit FoundationOne CDx Praxis Extended RAS Panel therascreen KRAS RGQ PCR Kit ONCO/Reveal Dx Lung & Colon Cancer Assay (O/RDx-LCCA) xT CDx | 9, | 2A or higher/Metastatic Colorectal Cancer (v. 3.2024) 7, |
Tukysa (Tucatinib) | Treatment of adult patients with unresectable or metastatic CRC with RAS wild-type HER2-positive
| No FDA-approved companion diagnostic | 10, | 2A or higher/Metastatic Colorectal Cancer (v. 3.2024) 7, |
Vitrakvi (larotrectinib) | NTRK fusion positive, metastatic CRC as determined by an FDA-approved test with no satisfactory alternative treatment options
| FoundationOne Liquid CDx | 11, | 2A or higher/Metastatic Colorectal Cancer (v. 3.2024) 7, |
Rozlytrek (entrectinib) | NTRK fusion positive, metastatic CRC as determined by an FDA-approved test with no satisfactory alternative treatment options
| FoundationOne Liquid CDx | 12, | 2A or higher/Metastatic Colorectal Cancer (v. 3.2024) 7, |
Source: FDA (2024)3,
CRC: colorectal cancer; EGFR: epidermal growth factor receptor; FDA: U.S. Food and Drug Administration; FOLFIRI: leucovorin, fluorouracil and irinotecan; FOLFOX: leucovorin, fluorouracil, and oxaliplatin; HER2: human epidermal growth factor receptor 2; mCRC: metastatic CRC; NCCN: National Comprehensive Cancer Network
Clinical laboratories may develop and validate tests in-house and market them as a laboratory service; laboratory-developed tests must meet the general regulatory standards of the Clinical Laboratory Improvement Amendments (CLIA). Laboratories that offer laboratory-developed tests must be licensed under CLIA for high-complexity testing. To date, the FDA has chosen not to require any regulatory review of this test.
This evidence review was created in October 2008 and has been updated regularly with searches of the PubMed database. The most recent literature update was performed through May 24, 2024.
Testing for individual genes (not gene panels) associated with U.S. Food and Drug Administration (FDA)-approved therapeutics (ie, as companion diagnostic tests) for therapies with National Comprehensive Cancer Network (NCCN) recommendations of 2A or higher are not subject to extensive evidence review. The pivotal evidence is included in Table 1 for informational purposes. Note that while the FDA approval of companion diagnostic tests for genes might include tests that are conducted as panels, the FDA approval is for specific genes (such as driver mutations) and not for all of the genes on the test panel.
For individuals with metastatic colorectal cancer ( CRC) who receive KRAS, NRAS, BRAF, NTRK, or HER2 gene variant testing to select treatment with FDA-approved targeted therapy, the evidence includes FDA-approved therapeutics with NCCN recommendations of 2A or higher and was not extensively evaluated.
For individuals with metastatic CRC who receive KRAS, NRAS, BRAF, NTRK,or HER2 testing to guide treatment, the evidence includes FDA-approved therapeutics with National Comprehensive Cancer Network (NCCN) recommendations of 2A or higher and was not extensively evaluated. The evidence includes the pivotal studies leading to the FDA and National Comprehensive Cancer Network (NCCN) recommendations.
Population Reference No. 1 Policy Statement | [X] Medically Necessary | [ ] Investigational |
One purpose of liquid biopsy testing of individuals who have metastatic CRC is to inform a decision regarding treatment selection (eg, whether to select a targeted treatment or standard treatment).
The following PICO was used to select literature to inform this review.
The relevant population of interest is individuals with metastatic CRC being considered for targeted therapy.
The test being considered is liquid biopsy using either circulating tumor DNA (ctDNA) or circulating tumor cells (CTCs). Both targeted polymerase chain reaction-based assays and broad next-generation sequencing-based approaches are available.
In patients who are able to undergo a biopsy, molecular characterization of the tumor is performed using standard tissue biopsy samples. Patients unable to undergo a biopsy generally receive standard therapy.
True-positive liquid biopsy test results lead to the initiation of appropriate treatment (eg, targeted therapy) without a tissue biopsy. False-positive liquid biopsy test results lead to the initiation of inappropriate therapy, which could shorten progression-free survival (PFS).
In individuals able to undergo a tissue biopsy, negative liquid biopsies reflex to tissue testing. In individuals unable to undergo a tissue biopsy, a negative liquid biopsy result would not change empirical treatment. Therefore, health outcomes related to negative test results do not differ between liquid biopsy and tissue biopsy.
The time frame for outcomes measures varies from several months to several years.
For the evaluation of clinical validity, studies that meet the following eligibility criteria were considered:
Reported on the accuracy of the marketed version of the technology (including any algorithms used to calculate scores)
Included a suitable reference standard (describe the reference standard)
Patient/sample clinical characteristics were described
Patient/sample selection criteria were described.
A test must detect the presence or absence of a condition, the risk of developing a condition in the future, or treatment response (beneficial or adverse).
Given the breadth of molecular diagnostic methodologies available to assess ctDNA and CTC, the clinical validity of each commercially available test must be established independently. Multiple high-quality studies are needed to establish the clinical validity of a test.
The clinical validity of the OncoBEAM RAS CRC assay has been evaluated in several published studies of patients with metastatic CRC. Study characteristics and results are shown in Tables 3 and 4. Study relevance, design, and conduct limitations are described in Tables and 8.
Study | Study Population | Design | Reference Standard | Timing of Tissue Biopsy and Liquid Biopsy | Blinding of Assessors |
Garcia-Foncillas et al (2018)13, |
| Prospective | Analysis of tissue using standard-of-care procedures validated by each hospital | Plasma collected before any therapeutic intervention. OncoBEAM used when standard of care RAS result was discordant with RAS result. The same tissue block was used for re-analysis by OncoBEAM. | Not stated; central laboratory used |
Vidal et al (2017)14, |
| Retrospective-prospective | Analysis of tissue samples conducted using institutional standard-of-care procedures |
| Yes |
Schmiegel et al (2017)15, |
| Prospective | Analysis of tissue samples conducted using Sanger sequencing |
| Not stated |
Grasselli et al (2017)16, |
| Retrospective-prospective | Analysis of tissue samples conducted using real-time PCR |
| Yes |
Normanno et al (2018)17, |
| Retrospective-prospective | Analysis of tissue samples conducted using NGS |
| Not stated |
CRC: colorectal cancer; EGFR: epidermal growth factor receptor; FOLFIRI: folinic acid, fluorouracil, irinotecan; NGS: next-generation sequencing; PCR: polymerase chain reaction.
Table 4. Clinical Validity Studies of the OncoBEAM RAS Assay-Results
Study | Initial N | Final N | Excluded Samples | RAS Variant-Positive, %a | Sensitivity | Specificity | PPV | NPV |
Garcia-Foncillas et al (2018)13, | 239 | 236 | 3 patients initially excluded because of total disease removal during primary surgery. RAS mutation status was evaluable in all 236 patients | 55.5 | 86.3 | 92.4 | NR | NR |
Vidal et al (2017)14, | NA | 115 | No description of samples excluded from comparison to tissue results | 51 | 96 (87 to 100)b | 90 (79 to 96)b | 90 (79 to 96)b | 96 (88 to 100)b |
Schmiegel et al (2017)15, | 102 | 98 | n=3 (inadequate plasma DNA); n=1 (RAS mutation not confirmed in tissue when re-evaluated) | 53 | 90 (79 to 96) | 94 (82 to 98) | NR | NR |
Grasselli et al (2017)16, | 157 | 146 | N=11 (pre-analytical requirements or lack of tumor tissue availability) | 59 | 89 (77 to 96)b | 90 (82 to 95)b | 84 (74 to 91)b | 93 (87 to 97)b |
Normanno et al (2018)17, | 340 | 92 | Tissue and plasma unavailable (not clear if tissue samples were sampled from those available or if all available were used) | 36 | 70 (51 to 84)b | 83 (71 to 92)b | 70 (56 to 81)b | 83 (74 to 89)b |
NA: not available; NPV: negative predictive value; NR: not reported; PPV: positive predictive value.
a With tissue biopsy reference standard.
b Values are percent with 95% confidence interval.
b Confidence intervals not reported in publication; calculated from data provided.
The FoundationACT ctDNA assay, the predecessor of FoundationOne Liquid, was compared to tissue biopsy using the FoundationOne assay in one manufacturer-sponsored study by Li et al in 2019.18, Study characteristics and results are shown in Tables 5 and 6. The researchers reported results on the subset of 51 patients with KRAS, NRAS, and BRAF variants. These results are shown in Table 10. Positive percent agreement was 80% for all time points for short variants and increased to 90% for cases in which tissue and liquid biopsy were measured less than 270 days apart. Limitations of this study are described in Tables 7 and 8.
Study | Study Population | Design | Reference Standard | Timing of Reference and Index Tests | Blinding of Assessors |
Li et al (2019)18, | Patients with CRC, 74% stage IV, 19% stage III, 7% stage II | Prospective and retrospective | Previously-collected tissue biopsy with FoundationOne assay | Liquid biopsy testing was done at the discretion of the clinician at variable time intervals after tissue sample collection (0 to 709 days). | Not stated |
CRC: colorectal cancer; ctDNA: circulating tumor DNA.
Table 6. Clinical Validity Study of the FoundationACT ctDNA Assay - Results
Study | Initial N | Final N | Excluded Samples | RAS Variant-Positive, % | Positive Percent Agreement (95% Confidence Interval) |
Li et al (2019)18, | 96 | 73 | 22 samples did not have detectable ctDNA | 51/74 (92%) | Overall (N=73): 79% Subset with KRAS, NRAS, and BRAF variants (n=51): 80% for all timepoints 90% for cases <270 days between tissue and liquid biopsy |
ctDNA: circulating tumor DNA ;.
Table 7. Study Relevance Limitations for Clinical Validity Studies of Liquid Biopsy in Metastatic Colorectal Cancer
Study | Populationa | Interventionb | Comparatorc | Outcomesd | Duration of Follow-Upe |
Li et al (2019)18, | 4.74% had metastatic disease | 2. Reference standard was FoundationOne assay | |||
Garcia-Foncillas et al (2018)13, | 3. PPV and NPV not reported | ||||
Vidal et al (2017)14, | |||||
Schmiegel et al (2017)15, | 2: Not clear if marketed version of test used | ||||
Grasselli et al (2017)16, | |||||
Normanno et al (2018)17, |
The study limitations stated in this table are those notable in the current review; this is not a comprehensive gaps assessment.
NPV: negative predictive value; PPV: positive predictive value.
a Population key: 1. Intended use population unclear; 2. Clinical context is unclear; 3. Study population is unclear; 4. Study population not representative of intended use.
b Intervention key: 1. Classification thresholds not defined; 2. Version used unclear; 3. Not intervention of interest.
c Comparator key: 1. Classification thresholds not defined; 2. Not compared to credible reference standard; 3. Not compared to other tests in use for same purpose.
d Outcomes key: 1. Study does not directly assess a key health outcome; 2. Evidence chain or decision model not explicated; 3. Key clinical validity outcomes not reported (sensitivity, specificity and predictive values); 4. Reclassification of diagnostic or risk categories not reported; 5. Adverse events of the test not described (excluding minor discomforts and inconvenience of venipuncture or noninvasive tests).
e Follow-Up key: 1. Follow-up duration not sufficient with respect to natural history of disease (true positives, true negatives, false positives, false negatives cannot be determined).
Study | Selectiona | Blindingb | Delivery of Testc | Selective Reportingd | Completeness of Follow-Upe | Statisticalf |
Li et al (2019)18, | 2. Inclusion required a previously performed FoundationACT assay; previous treatments varied | 1: Blinding unclear | 2. Timing of liquid biopsy and tissue biopsy varied (range 0 to 709 days) | 2. 20% of samples had no detectable ctDNA | ||
Garcia-Foncillas et al (2018)13, | 1. Not clear whether samples were consecutive or convenience | 1: Blinding unclear | 1. Registration not described | |||
Vidal et al (2017)14, | 1. Not clear whether samples were consecutive or convenience | 2: Blood collected approximately 1.5 m after tissue | 1. Registration not described | 1. Not clear whether there were samples that were insufficient for analysis or failed to produce results | 1. CIs not reported but calculated based on data provided | |
Schmiegel et al (2017)15, | 1: Not clear how patients were selected from those that were eligible | 1: Blinding unclear | 1. Registration not described | |||
Grasselli et al (2017)16, | 1: Not clear how patients were selected from those that were eligible | 2: Blood collected approximately 1.5 m after tissue | 1. CIs not reported but calculated based on data provided | |||
Normanno et al (2018)17, | 1: Not clear how tumor samples were selected from those available | 1: Blinding unclear | 1: Unclear when tissue was collected | 1. Registration not described | 2: Only 27% of CAPRI-GOIM trial participants included | 1. CIs not reported but calculated based on data provided |
The study limitations stated in this table are those notable in the current review; this is not a comprehensive gaps assessment.
CI: confidence interval; ctDNA: circulating tumor DNA.
a Selection key: 1. Selection not described; 2. Selection not random or consecutive (ie, convenience).
b Blinding key: 1. Not blinded to results of reference or other comparator tests.
c Test Delivery key: 1. Timing of delivery of index or reference test not described; 2. Timing of index and comparator tests not same; 3. Procedure for interpreting tests not described; 4. Expertise of evaluators not described.
d Selective Reporting key: 1. Not registered; 2. Evidence of selective reporting; 3. Evidence of selective publication.
e Follow-Up key: 1. Inadequate description of indeterminate and missing samples; 2. High number of samples/patients excluded; 3. High loss to follow-up or missing data.
f Statistical key: 1. Confidence intervals and/or p values not reported; 2. Comparison to other tests not reported.
A test is clinically useful if the use of the results informs management decisions that improve the net health outcome of care. The net health outcome can be improved if patients receive correct therapy, or more effective therapy, or avoid unnecessary therapy, or avoid unnecessary testing.
Direct evidence of clinical utility is provided by studies that have compared health outcomes for patients managed with and without the test. Because these are intervention studies, the preferred evidence would be from RCTs.
No RCTs were identified on the clinical utility of liquid biopsy to guide treatment for patients with metastatic CRC.
Indirect evidence on clinical utility rests on clinical validity. If the evidence is insufficient to demonstrate test performance, no inferences can be made about clinical utility.
The clinical validity of the OncoBEAM RAS CRC Assay has been studied in multiple observational studies. When compared to tissue biopsy, sensitivity ranged from 70% (95% confidence interval [CI], 51% to 84%) to 96% (95% CI, 87% to 100%) and specificity ranged from 83% (95% CI, 71% to 92%) to 94% (95% CI, 82% to 98%). FoundationOne Liquid has been compared to tissue biopsy with the FoundationACT assay in 1 observational study; positive percent agreement was 80% overall and 90% when tissue and liquid biopsy were collected less than 270 days apart. Clinical validity studies were limited by unclear reporting of blinding, use of convenience rather than consecutive samples, and variation in the timing of sample collection. There are no published studies reporting clinical outcomes or clinical utility.
For individuals with metastatic CRC who receive circulating tumor DNA or circulating tumor cell testing (liquid biopsy) to guide treatment, the evidence includes observational studies. Relevant outcomes are OS, disease-specific survival, test validity, morbid events, and medication use. Given the breadth of methodologies available to assess circulating tumor DNA and circulating tumor cells, the clinical validity of each commercially available test must be established independently. The clinical validity of the OncoBEAM™ RAS CRC Assay has been studied in multiple observational studies. When compared to tissue biopsy, sensitivity ranged from 70% (51% to 84%) to 96% (95% CI, 87% to 100%) and specificity ranged from 83% (95% CI, 71% to 92%) to 94% (82% to 98%). FoundationOne® Liquid has been compared to tissue biopsy with the FoundationACT™ assay in 1 observational study; positive percent agreement was 80% overall and 90% when tissue and liquid biopsy were collected less than 270 days apart. Clinical validity studies were limited by unclear reporting of blinding, use of convenience rather than consecutive samples, and variation in the timing of sample collection. There are no published studies reporting clinical outcomes or clinical utility. The evidence is insufficient to determine that the technology results in an improvement in the net health outcome.
Population Reference No. 2 Policy Statement | [ ] Medically Necessary | [X] Investigational |
The purpose of the following information is to provide reference material. Inclusion does not imply endorsement or alignment with the reference medical policy conclusions.
Guidelines or position statements will be considered for inclusion in ‘Supplemental Information' if they were issued by, or jointly by, a US professional society, an international society with US representation, or National Institute for Health and Care Excellence (NICE). Priority will be given to guidelines that are informed by a systematic review, include strength of evidence ratings, and include a description of management of conflict of interest.
In 2017, the American Society of Clinical Oncology along with American Society for Clinical Pathology, College of American Pathologists, and Association for Molecular Pathology published guidelines on molecular biomarkers for the evaluation of colorectal cancer.19, Table 9 summarizes the relevant guidelines.
Guidelines | Type | SOE | QOE |
Colorectal carcinoma patients being considered for anti-EGFR therapy must receive RAS mutational testing. Mutational analysis should include KRASand NRAScodons 12, 13 of exon 2; 59, 61 of exon 3; and 117 and 146 of exon 4 ("expanded" or "extended" RAS) | Recommendation | Convincing/adequate, benefits outweigh harms | High/intermediate |
BRAFp.V600 (BRAF c. 1799 [ p.V600]) mutational analysis should be performed in colorectal cancer tissue in patients with colorectal carcinoma for prognostic stratification | Recommendation | Adequate/inadequate, balance of benefits and harms | Intermediate/low |
BRAF p.V600 mutational analysis should be performed in deficient MMR tumors with loss of MLH1 to evaluate for Lynch Syndrome risk. Presence of a BRAF mutation strongly favors sporadic pathogenesis. The absence of BRAF mutation does not exclude risk of Lynch syndrome | Recommendation | Adequate/inadequate, balance of benefits and harms | Intermediate/low |
Clinicians should order mismatch repair status testing in patients with colorectal cancers for the identification of patients at high-risk for Lynch syndrome and/or prognostic stratification | Recommendation | Adequate/inadequate, balance of benefits and harms | Intermediate/low |
There is insufficient evidence to recommend BRAF c.1799 (p.V600) mutational status as a predictive molecular biomarker for response to anti-EGFR inhibitors | No recommendation | Insufficient, benefits/harms balance unknown | Insufficient |
EGFR: epidermal growth factor receptor; MLH1: mutL homolog 1;MMR: mismatch repair; QOE: quality of evidence; SOE: strength of evidence.
National Comprehensive Cancer Network
The following information is based on the National Comprehensive Cancer Network (NCCN) guidelines on the treatment of colon cancer (v. 3.2024 ).7, Guidelines are updated frequently; refer to the source document for most recent updates and for additional detail.
RAS and BRAF Testing
The guidelines recommend that all patients with metastatic colorectal cancer should have tumor tissue genotyped for RAS (KRASand NRAS) and BRAF variants, individually or as part of a next-generation sequencing panel, for all patients with metastatic colon cancer Patients with any known KRASmutation (exon 2, 3, 4) or NRASmutation (exon 2, 3, 4) should not be treated with either cetuximab or panitumumab. BRAF V600E mutation makes response to panitumumab or cetuximab highly unlikely unless given with a BRAF inhibitor (Category 2A).
NTRK
The guidelines acknowledge that NTRK fusions are extremely rare in colorectal cancer, and typically limited to tumors that are wild-type for KRAS, NRAS, and BRAF. NTRK inhibitors have been shown to have activity only in those cases with NTRK fusions, and not with NTRK point mutations. Selection of the appropriate assay for NTRK fusion detection is stated to depend on "tumor type and genes involved, as well as consideration of other factors such as available material, accessibility of various clinical assays, and whether comprehensive genomic testing is needed concurrently."
Human Epidermal Receptor 2 Testing
The guidelines recommend testing for human epidermal receptor 2 (HER2) amplifications for patients with metastatic colorectal cancer. Anti-HER2 therapy is only indicated in HER2-ampliified tumors that are also RAS and BRAFwild type. If the tumor is already known to have a KRAS/NRAS or BRAF mutation, HER2 testing is not indicated.(Category 2A) HER2 testing is performed via immunohistochemistry (IHC) with some results requiring reflex to fluorescence in situ hybridization (FISH); and, next-generation sequencing (NGS) is another methodology endorsed for testing for HER2 amplification.
Circulating Tumor DNA
The NCCN colon cancer guidelines state that determination of gene status for KRAS/NRAS and BRAF mutations may be carried out using either a tissue or blood-based (eg, liquid) biopsy, although tissue based testing is preferred.
Not applicable.
A March 2018 decision memo from the Centers for Medicare & Medicaid Services addressed next-generation sequencing for Medicare beneficiaries with advanced cancer.20, The memo states:
The Centers for Medicare & Medicaid Services has determined that NGS as a diagnostic laboratory test is reasonable and necessary and covered nationally when performed in a Clinical Laboratory Improvement Amendments (CLIA)-certified laboratory, when ordered by a treating physician and when all of the following requirements are met:
1. Patient has:
either recurrent, relapsed, refractory, metastatic, or advanced stages III or IV cancer; and
either not been previously tested using the same NGS test for the same primary diagnosis of cancer or repeat testing using the same NGS test only when a new primary cancer diagnosis is made by the treating physician; and
decided to seek further cancer treatment (e.g., therapeutic chemotherapy).
2. The diagnostic laboratory test using NGS must have:
FDA [U.S. Food and Drug Administration] approval or clearance as a companion in vitro diagnostic; and
an FDA [U.S. Food and Drug Administration] approved or cleared indication for use in that patient's cancer; and
results provided to the treating physician for management of the patient using a report template to specify treatment options.
Regarding liquid biopsies, the memo states, "The NCD does not limit coverage to how to prepare a sample for performing a diagnostic laboratory test using NGS. Commenters submitted published articles on liquid biopsies (also referred to as circulating tumor DNA (ctDNA) or plasma cell-free DNA (cfDNA) tests). We reviewed and included in the evidence and analysis of 4 studies on liquid biopsies. At this time, liquid-based multi-gene sequencing panel tests are left to contractor discretion if certain patient criteria are met."20,
Currently unpublished trials that might influence this review are listed in Table 10.
NCT No. | Trial Name | Planned Enrollment | Completion Date |
Ongoing | |||
NCT03365882 | S1613, A Randomized Phase II Study of Trastuzumab and Pertuzumab (TP) Compared to Cetuximab and Irinotecan (CETIRI) in Advanced/Metastatic Colorectal Cancer (mCRC) With HER-2 Amplification | 240 | Nov 2024 |
NCT02465060 | Targeted Therapy Directed by Genetic Testing in Treating Patients With Advanced Refractory Solid Tumors, Lymphomas, or Multiple Myeloma (The MATCH Screening Trial) | 6452 | Dec 2025 |
NCT04776655 | Phase III Study in mCRC Patients With RAS/BRAF Wild Type Tissue and RAS Mutated in LIquid BIopsy to Compare in First-line Therapy FOLFIRI Plus CetuxiMAb or BevacizumaB (LIBImAb Study) | 280 | Apr 2024 |
NCT04264702 | BESPOKE Study of ctDNA Guided Therapy in Colorectal Cancer | 1788 | Sep 2025 |
NCT05253651 | An Open-label Randomized Phase 3 Study of Tucatinib in Combination With Trastuzumab and mFOLFOX6 Versus mFOLFOX6 Given With or Without Either Cetuximab or Bevacizumab as First-line Treatment for Subjects With HER2+ Metastatic Colorectal Cancer | 400 | Apr 2028 |
NCT04744831 | Trastuzumab Deruxtecan in Participants With HER2-overexpressing Advanced or Metastatic Colorectal Cancer (DESTINY-CRC02) | 122 | Jul 2024 |
Unpublished | |||
NCT03457896 | Study of Neratinib +Trastuzumab or Neratinib + Cetuximab in Patients With KRAS/NRAS/BRAF/PIK3CA Wild-Type Metastatic Colorectal Cancer by HER2 Status | 35 | Sep 2022 (unknown status) |
NCT03602079 | A Phase I-II, FIH Study of A166 in Locally Advanced/Metastatic Solid Tumors Expressing Human Epidermal Growth Factor Receptor 2 (HER2) or Are HER2 Amplified That Did Not Respond or Stopped Responding to Approved Therapies | 49 | Dec 2022 (completed) |
NCT: national clinical trial.
Codes | Number | Description |
---|---|---|
CPT | 81210 | BRAF (B-Raf proto-oncogene, serine/threonine kinase) (eg, colon cancer, melanoma), gene analysis, V600 variant(s) |
81275 | KRAS (Kirsten rat sarcoma viral oncogene homolog) (eg, carcinoma) gene analysis; variants in exon 2 (eg, codons 12 and 13) | |
81276 | KRAS (Kirsten rat sarcoma viral oncogene homolog) (eg, carcinoma) gene analysis; additional variant(s) (eg, codon 61, codon 146) | |
81301 | Microsatellite instability analysis (eg, hereditary non-polyposis colorectal cancer, Lynch syndrome) of markers for mismatch repair deficiency (eg, BAT25, BAT26), includes comparison of neoplastic and normal tissue, if performed | |
81311 | NRAS (neuroblastoma RAS viral [v-ras] oncogene homolog) (eg, colorectal carcinoma), gene analysis, variants in exon 2 (eg, codons 12 and 13) and exon 3 (eg, codon 61) | |
88360 | Morphometric analysis, tumor immunohistochemistry (eg, Her-2/neu, estrogen receptor/progesterone receptor), quantitative or semiquantitative, per specimen, each single antibody stain procedure; manual | |
88363 | Examination and selection of retrieved archival (ie, previously diagnosed) tissue(s) for molecular analysis (eg, KRAS mutational analysis) | |
88374 | Morphometric analysis, in situ hybridization (quantitative or semi-quantitative), using computer-assisted technology, per specimen; each multiplex probe stain procedure | |
0037U | Targeted genomic sequence analysis, solid organ neoplasm, DNA analysis of 324 genes, interrogation for sequence variants, gene copy number amplifications, gene rearrangements, microsatellite instability and tumor mutational burden (FoundationOne CDx™ (F1CDx®) test) | |
0111U | Oncology (colon cancer), targeted KRAS (codons 12, 13, and 61) and NRAS (codons 12, 13, and 61) gene analysis utilizing formalin-fixed paraffin-embedded tissue (Praxis™ Extended RAS Panel from Illumina) | |
0239U | Targeted genomic sequence analysis panel, solid organ neoplasm, cell-free DNA, analysis of 311 or more genes, interrogation for sequence variants, including substitutions, insertions, deletions, select rearrangements, and copy number variations (FoundationOne® Liquid CDx from Foundation Medicine) | |
0242U | Targeted genomic sequence analysis panel, solid organ neoplasm, cell-free circulating DNA analysis of 55-74 genes, interrogation for sequence variants, gene copy number amplifications, and gene rearrangements (Guardant360® CDx from Guardant Health) | |
0338U | Oncology (solid tumor), circulating tumor cell selection, identification, morphological characterization, detection and enumeration based on differential EpCAM, cytokeratins 8, 18, and 19, and CD45 protein biomarkers, and quantification of HER2 protein biomarker–expressing cells, peripheral blood for CellSearch® HER2 Circulating Tumor Cell (CTC-HER2) Test | |
0471U | Oncology (colorectal cancer), qualitative real-time PCR of 35 variants of KRAS and NRAS genes (exons 2, 3, 4), formalinfixed paraffin-embedded (FFPE), predictive, identification of detected mutations: CRCdx® RAS Mutation Detection Kit by EntroGen, Inc (eff 07/01/2024) | |
0473U | Oncology (solid tumor), nextgeneration sequencing (NGS) of DNA from formalin-fixed paraffinembedded (FFPE) tissue with comparative sequence analysis from a matched normal specimen (blood or saliva), 648 genes, interrogation for sequence variants, insertion and deletion alterations, copy number variants, rearrangements, microsatellite instability, and tumor-mutation burden: xT CDx by Tempus AI, Inc. (eff 07/01/2024) | |
ICD-10-CM | C18.0-C18.9 | Malignant neoplasm of colon code range |
C19 | Malignant neoplasm of rectosigmoid junction | |
C20 | Malignant neoplasm of rectum | |
C78.5 | Secondary malignant neoplasm of large intestine and rectum | |
ICD-10-PCS | Not applicable. ICD-10-PCS codes are only used for inpatient services. No ICD procedure codes exist for laboratory tests. | |
Type of Service | Laboratory | |
Place of Service | Outpatient |
Date | Action | Description |
08/23/2024 | Annual Review | Policy updated with literature review through May 24, 2024; new indications and MN policy statements added for NTRK gene fusion testing to select targeted treatment. |
07/17/2024 | Preliminar Review | Code Changes Effective 07/01/2024 Added 0473U Oncology (solid tumor), next generation sequencing (NGS) of DNA from formalin-fixed paraffin embedded(FFPE) tissue with comparative sequence analysis from a matched normal specimen (blood or saliva), 648 genes, interrogation for sequence variants, insertion and deletion alterations, copy number variants, rearrangements, microsatellite instability, and tumor-mutation burden (xTCDxby Tempus AI) |
08/17/2023 | Annual Review | Policy updated with literature review through May 30, 2023. Policy extensively pruned: Extensive evidence review is not included for somatic tests of individual genes (not gene panels) associated with FDA approved therapies with National Comprehensive Cancer Network (NCCN) recommendations of 2A or higher; indications related to immunotherapy and tumor mutational burden testing removed and added to new policy 2.04.157(11.003.140). Policy statement revised to Medically Necessary for testing for HER2 in individuals with metastatic colorectal cancer to select individuals for targeted treatment. Information pertaining to immunotherapy was moved to policy 2.04.157(11.003.140). NCCN guidelines: Determination of tumor gene status for KRAS/NRAS and BRAF mutations, as well as HER2 amplifications and MSI/MMR status (if not previously done), are recommended for patients with mCRC. |
08/09/2022 | Annual review | Policy updated with literature review through June 13, 2022; references added. Rationale section extensively revised. Extensive evidence review is not included for somatic tests of individual genes (not gene panels) associated with U.S. Food and Drug Administration (FDA)-approved therapeutics (ie, as companion diagnostic tests) for therapies with National Comprehensive Cancer Network (NCCN) recommendations of 2A or higher. MN statement on BRAF variant testing expanded to include selecting individuals for treatment with FDA-approved therapies. Title changed to specify somatic testing and to list the specific biomarkers included. |
08/03/2021 | Annual review | Policy updated with literature review through June 18, 2021; references added. Added new indications for MMR/MSI, HER2, and TMB testing. MMR/MSI testing may be considered medically necessary; HER2 and TMB testing is investigational. Other policy statements unchanged. Title changed to reflect additions. |
08/02/2020 | Annual review | Policy updated with literature review through June 15, 2020; no references added. Policy statements unchanged. |
08/02/2019 | Annual review | Policy updated with literature review through May 29, 2019; references added. Indication 4 (KRAS, NRAF, and BRAF variant analysis using circulating tumor DNA or circulating tumor cell testing [liquid biopsy] to guide treatment) removed from policy 2.01.141 and inserted here. Policy statement for Indication 4 added: "KRAS, NRAF, and BRAF variant analysis using circulating tumor DNA or circulating tumor cell testing (liquid biopsy) to guide treatment for patients with metastatic colorectal cancer is considered investigational." Title changed to include liquid biopsy. |
09/14/2016 | ||
04/05/2016 | ||
09/17/2013 | ||
05/15/2012 | ||
03/12/2012 | ICD-10 CM added | |
06/11/2009 | iCES | |
11/21/2008 | Created | New policy |